Laurent Gatto : rechercher sur Z-Library

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1

Assessing sub-cellular resolution in spatial proteomics experiments

Gatto, Laurent, Breckels, Lisa M., Lilley, Kathryn S.

Journal:

Current Opinion in Chemical Biology

Année:

2019

Langue:

english

Fichier:

PDF, 12.39 MB

english, 2019

2

Orchestrating high-throughput genomic analysis with Bioconductor

Huber, Wolfgang, Carey, Vincent J, Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S, Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, F

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 364 KB

english, 2015

3

Interferon regulatory factor 7-mediated responses are defective in cord blood plasmacytoid dendritic cells

Bénédicte Danis, Thaddeus C. George, Stanislas Goriely, Binita Dutta, Joëlle Renneson, Laurent Gatto, Patricia Fitzgerald-Bocarsly, Arnaud Marchant, Michel Goldman, Fabienne Willems, Dominique De Wit

Journal:

European Journal of Immunology

Année:

2008

Langue:

english

Fichier:

PDF, 318 KB

english, 2008

4

Using R and Bioconductor for proteomics data analysis

Gatto, Laurent, Christoforou, Andy

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Année:

2014

Langue:

english

Fichier:

PDF, 2.19 MB

english, 2014

5

A cross-platform toolkit for mass spectrometry and proteomics

Chambers, Matthew C, Maclean, Brendan, Burke, Robert, Amodei, Dario, Ruderman, Daniel L, Neumann, Steffen, Gatto, Laurent, Fischer, Bernd, Pratt, Brian, Egertson, Jarrett, Hoff, Katherine, Kessner, Da

Journal:

Nature Biotechnology

Année:

2012

Langue:

english

Fichier:

PDF, 233 KB

english, 2012

6

A draft map of the mouse pluripotent stem cell spatial proteome

Christoforou, Andy, Mulvey, Claire M., Breckels, Lisa M., Geladaki, Aikaterini, Hurrell, Tracey, Hayward, Penelope C., Naake, Thomas, Gatto, Laurent, Viner, Rosa, Arias, Alfonso Martinez, Lilley, Kath

Journal:

Nature Communications

Année:

2016

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2016

7

BioContainers: An open-source and community-driven framework for software standardization

Leprevost, Felipe da Veiga, Grüning, Björn A., Alves Aflitos, Saulo, Röst, Hannes L., Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimene

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 223 KB

english, 2017

8

Using hyperLOPIT to perform high-resolution mapping of the spatial proteome

Mulvey, Claire M, Breckels, Lisa M, Geladaki, Aikaterini, Britovšek, Nina Kočevar, Nightingale, Daniel J H, Christoforou, Andy, Elzek, Mohamed, Deery, Michael J, Gatto, Laurent, Lilley, Kathryn S

Journal:

Nature Protocols

Année:

2017

Langue:

english

Fichier:

PDF, 5.07 MB

english, 2017

9

Organelle proteomics experimental designs and analysis

Laurent Gatto, Juan Antonio Vizcaíno, Henning Hermjakob, Wolfgang Huber, Kathryn S. Lilley

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 643 KB

english, 2010

10

A posteriori quality control for the curation and reuse of public proteomics data

Joseph M. Foster, Sven Degroeve, Laurent Gatto, Matthieu Visser, Rui Wang, Johannes Griss, Rolf Apweiler, Lennart Martens

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 468 KB

english, 2011

11

Challenges for proteomics core facilities

Kathryn S. Lilley, Michael J. Deery, Laurent Gatto

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 319 KB

english, 2011

12

Morphological and mitochondrial DNA analyses indicate the presence of a hybrid zone between two species of leaf beetle (Coleoptera; Chrysomelidae) in Southern Spain

LAURENT GATTO, PATRICK MARDULYN, JACQUES M. PASTEELS

Journal:

Biological Journal of the Linnean Society

Année:

2008

Langue:

english

Fichier:

PDF, 399 KB

english, 2008

13

TC-1734: An Orally Active Neuronal Nicotinic Acetylcholine Receptor Modulator with Antidepressant, Neuroprotective and Long-Lasting Cognitive Effects

Gregory J. Gatto, G Andrees Bohme, William S. Caldwell, Sharon R. Letchworth, Vincent M. Traina, M. Carmen Obinu, Michel Laville, Michel Reibaud, Laurent Pradier, Geoffrey Dunbar, Merouane Bencherif

Journal:

CNS Drug Reviews

Année:

2004

Langue:

english

Fichier:

PDF, 268 KB

english, 2004

14

LC-MS/MS Methods for Absolute Quantification and Identification of Proteins Associated with Chimeric Plant Oil Bodies

Capuano, Floriana, Bond, Nicholas J., Gatto, Laurent, Beaudoin, Frédéric, Napier, Johnathan A., Benvenuto, Eugenio, Lilley, Kathryn S., Baschieri, Selene

Journal:

Analytical Chemistry

Année:

2011

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2011

15

Improving Qualitative and Quantitative Performance for MS E -based Label-free Proteomics

Bond, Nicholas J., Shliaha, Pavel V., Lilley, Kathryn S., Gatto, Laurent

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 615 KB

english, 2013

16

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux inSerratiasp. ATCC 39006

Wilf, Nabil M, Reid, Adam J, Ramsay, Joshua P, Williamson, Neil R, Croucher, Nicholas J, Gatto, Laurent, Hester, Svenja S, Goulding, David, Barquist, Lars, Lilley, Kathryn S, Kingsley, Robert A, Douga

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 486 KB

english, 2013

17

Effects of Traveling Wave Ion Mobility Separation on Data Independent Acquisition in Proteomics Studies

Shliaha, Pavel V., Bond, Nicholas J., Gatto, Laurent, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Année:

2013

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2013

18

Identification of Trans-Golgi Network Proteins in Arabidopsis thaliana Root Tissue

Groen, Arnoud J., Sancho-Andrés, Gloria, Breckels, Lisa M., Gatto, Laurent, Aniento, Fernando, Lilley, Kathryn S.

Journal:

Journal of Proteome Research

Année:

2014

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2014

19

Titanium implantation in bulk and thin film amorphous silica

Tisserand, Stéphane, Flory, François, Gatto, Alexandre, Roux, Laurent, Adamik, Miklos, Kovacs, Istvan

Journal:

Journal of Applied Physics

Année:

1998

Langue:

english

Fichier:

PDF, 1.89 MB

english, 1998

20

and Bioconductor

Gatto, Laurent, Breckels, Lisa M., Naake, Thomas, Gibb, Sebastian

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2015

21

Testing and Validation of Computational Methods for Mass Spectrometry

Gatto, Laurent, Hansen, Kasper D., Hoopmann, Michael R., Hermjakob, Henning, Kohlbacher, Oliver, Beyer, Andreas

Journal:

Journal of Proteome Research

Année:

2015

Langue:

english

Fichier:

PDF, 283 KB

english, 2015

22

Accounting for the multiple natures of missing values in label-free quantitative proteomics datasets to compare imputation strategies

Lazar, Cosmin, Gatto, Laurent, Ferro, Myriam, Bruley, Christophe, Burger, Thomas

Journal:

Journal of Proteome Research

Année:

2016

Langue:

english

Fichier:

PDF, 726 KB

english, 2016

23

SPIE Proceedings [SPIE Optical Systems Design and Production - Berlin, Germany (Wednesday 26 May 1999)] Advances in Optical Interference Coatings - Stress in dielectric thin films: evolution with annealing and ion implantation

Mahodaux, Christine, Rigneault, Herve, Gallais, Laurent, Gatto, Alexandre, Moretti, Paul, Amra, Claude, Macleod, H. Angus

Année:

1999

Langue:

english

Fichier:

PDF, 1.08 MB

english, 1999

24

Analysis of the Drosophila melanogaster proteome dynamics during the embryo early development by a combination of label-free proteomics approaches

Fabre, Bertrand, Korona, Dagmara, Groen, Arnoud, Vowinckel, Jakob, Gatto, Laurent, Deery, Mike J, Ralser, Markus, Russell, Steven, Lilley, Kathryn S

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.41 MB

english, 2016

25

Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells

Mulvey, Claire M., Schröter, Christian, Gatto, Laurent, Dikicioglu, Duygu, Fidaner, Isik Baris, Christoforou, Andy, Deery, Michael J., Cho, Lily T. Y., Niakan, Kathy K., Martinez-Arias, Alfonso, Lille

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1005 KB

english, 2015

26

DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics

Wieczorek, Samuel, Combes, Florence, Lazar, Cosmin, Giai Gianetto, Quentin, Gatto, Laurent, Dorffer, Alexia, Hesse, Anne-Marie, Coute, Yohann, Ferro, Myriam, Bruley, Christophe, Burger, Thomas

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 47 KB

english, 2016

27

Assessing the Applicability of the GTR Nucleotide Substitution Model through Simulations

Gatto, Laurent, Catanzaro, Daniele, Milinkovitch, Michel C.

Journal:

Evolutionary Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 614 KB

english, 2006

28

Negative feedback via RSK modulates Erk‐dependent progression from naïve pluripotency

Nett, Isabelle RE, Mulas, Carla, Gatto, Laurent, Lilley, Kathryn S, Smith, Austin

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.82 MB

english, 2018

29

A Bayesian mixture modelling approach for spatial proteomics

Crook, Oliver M., Mulvey, Claire M., Kirk, Paul D. W., Lilley, Kathryn S., Gatto, Laurent, Vogel, Christine

Journal:

PLoS Computational Biology

Année:

2018

Langue:

english

Fichier:

PDF, 4.41 MB

english, 2018

30

ensembldb: an R package to create and use Ensembl-based annotation resources

Rainer, Johannes, Gatto, Laurent, Weichenberger, Christian X., Hancock, John

Journal:

Année:

2019

Fichier:

PDF, 230 KB

2019

31

Recent developments in scholarly publishing to improve research practices in the life sciences

Eglen, Stephen J., Mounce, Ross, Gatto, Laurent, Currie, Adrian M., Nobis, Yvonne

Journal:

Emerging Topics in Life Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 228 KB

english, 2018

32

Reproducibility and Transparency by Design

Petyuk, Vladislav A, Gatto, Laurent, Payne, Samuel H

Journal:

Molecular & Cellular Proteomics

Année:

2019

Langue:

english

Fichier:

PDF, 87 KB

english, 2019

33

Towards reproducible MSMS data preprocessing, quality control and quantification

Gatto, Laurent, Lilley, Kathryn

Journal:

Bioentrepreneur

Année:

2010

Langue:

english

Fichier:

PDF, 2.04 MB

english, 2010

34

Towards reproducible MSMS data preprocessing, quality control and quantification

Gatto, Laurent, Lilley, Kathryn

Journal:

Bioentrepreneur

Année:

2010

Fichier:

PDF, 2.04 MB

2010

35

Proteome mapping of a cyanobacterium reveals distinct compartment organisation and cell-dispersed metabolism

Baers, Laura L, Breckels, Lisa M, Mills, Lauren A, Gatto, Laurent, Deery, Michael, Stevens, Tim J, Howe, Christopher J, Lilley, Kathryn S, Lea-Smith, David J

Journal:

PLANT PHYSIOLOGY

Année:

2019

Langue:

english

Fichier:

PDF, 12.74 MB

english, 2019

36

MSnbase, efficient and elegant R-based processing and visualisation of raw mass spectrometry data

Gatto, Laurent, Gibb, Sebastian, Rainer, Johannes

Journal:

Journal of Proteome Research

Année:

2020

Fichier:

PDF, 778 KB

2020